Research workbench

Crystal structure of bacillus subtilis ywea

Analyse Crystal structure of bacillus subtilis ywea in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MKD
Type: protein
Length: 494 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ywea
UniProt: A0A164UMC7
Pockets: 2 · best druggability 0.69

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Ywea	protein	124	6% helix, 48% strand	A0A164UMC7
D	Ywea	protein	122	5% helix, 48% strand	A0A164UMC7

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	978	0.69	0.74	67	empty
2	75	0.38	0.78	15	empty

Interfaces

5 interfaces between chains.

A–B · 637 Å² buried · 12 hydrogen bonds · protein-protein
C–D · 635 Å² buried · 13 hydrogen bonds · protein-protein
B–C · 230 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 79 Å² buried · 0 hydrogen bonds · protein-protein
B–D · 56 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5MKD · Crystal structure of Bacillus subtilis Ywea · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A164UMC7
Elsewhere: RCSB PDB 5MKD · PDBe 5MKD · UniProt A0A164UMC7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.