Research workbench
Maltodextrin binding protein MALE1 from L. casei BL23 bound to beta- cyclodextrin
Analyse Maltodextrin binding protein MALE1 from L. casei BL23 bound to beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MK9
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALE1
- UniProt
- B0L7B0
- Ligands
- GLC, CL
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALE1 | protein | 378 | 47% helix, 20% strand | B0L7B0 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 7 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 334 | 0.57 | 0.76 | 39 | GLC |
| 2 | 88 | 0.42 | 0.79 | 23 | empty |
Compared structures
- 5MK9 · Maltodextrin binding protein MalE1 from L. casei BL23 bound to beta-cyclodextrin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0L7B0
- Elsewhere: RCSB PDB 5MK9 · PDBe 5MK9 · UniProt B0L7B0
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