Research workbench

Designed armadillo repeat protein YIII(DQ)4CQI

Analyse Designed armadillo repeat protein YIII(DQ)4CQI in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MFB
Type: protein
Length: 477 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: YIII(DQ)4CQI
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	YIII(DQ)4CQI	protein	238	77% helix, 0% strand	—
B	YIII(DQ)4CQI	protein	239	76% helix, 0% strand	—

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	532	0.64	0.76	52	empty

Interfaces

1 interface between chains.

A–B · 84 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

5MFB · Designed armadillo repeat protein YIII(Dq)4CqI · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5MFB · PDBe 5MFB

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