Research workbench
Structure of tssk C-terminal domain from E. COLI T6SS
Analyse Structure of tssk C-terminal domain from E. COLI T6SS in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5M2Y
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tssk C
- UniProt
- B7LG64
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tssk C | protein | 130 | 22% helix, 39% strand | B7LG64 |
| B | Tssk C | protein | 128 | 23% helix, 40% strand | B7LG64 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.26 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 536 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5M2Y · Structure of TssK C-terminal domain from E. coli T6SS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7LG64
- Elsewhere: RCSB PDB 5M2Y · PDBe 5M2Y · UniProt B7LG64
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