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Structure of a spumaretrovirus gag central domain reveals an ancient retroviral capsid
Analyse Structure of a spumaretrovirus gag central domain reveals an ancient retroviral… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5M1H
- Type
- protein
- Length
- 180 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag protein
- UniProt
- P14349
- Pockets
- 2 · best druggability 0.30
Structure
solution nmr · 1 distinct chain · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag protein | protein | 180 | 62% helix, 0% strand | P14349 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.30 | 0.76 | 16 | empty |
| 2 | 56 | 0.26 | 0.72 | 10 | empty |
Compared structures
- 5M1H · Structure of a Spumaretrovirus Gag central domain reveals an ancient retroviral capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14349
- Elsewhere: RCSB PDB 5M1H · PDBe 5M1H · UniProt P14349
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