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N-terminal domain of mouse shisa 3

Analyse N-terminal domain of mouse shisa 3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5M0W
Type
protein
Length
63 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein shisa-3 homolog
UniProt
Q3UPR0
Ligands
SO4

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein shisa-3 homologprotein6310% helix, 30% strandQ3UPR0

Ligands and binding sites

  • SO4 · Sulfate ion · ion · 2 copies · chains A
  • GOL · Glycerol · additive · 3 copies · chains A
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide, 1 modified (disulfide, cyclization).

Compared structures

  • 5M0W · N-terminal domain of mouse Shisa 3 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q3UPR0 · AlphaFold monomer V2.0 prediction for protein shisa-3 homolog (Q3UPR0) · a predicted model of the same protein · chain A against A, TM-score 0.95

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