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Crystal structure of lob domain of RAMOSA2 from wheat

Analyse Crystal structure of lob domain of RAMOSA2 from wheat in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5LY0
Type: protein
Length: 215 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lob family transfactor RAMOSA2.1
UniProt: D9MPF3
Ligands: ZN
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 2 distinct chains · 70% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lob family transfactor RAMOSA2.1	protein	108	70% helix, 0% strand	D9MPF3
B	Lob family transfactor RAMOSA2.1	protein	107	69% helix, 0% strand	D9MPF3

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.52	0.87	13	empty

Interfaces

1 interface between chains.

A–B · 1761 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

5LY0 · Crystal structure of LOB domain of Ramosa2 from Wheat · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D9MPF3
Elsewhere: RCSB PDB 5LY0 · PDBe 5LY0 · UniProt D9MPF3

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