Research workbench
Israeli acute paralysis virus heated to 63 degree - full particle
Analyse Israeli acute paralysis virus heated to 63 degree - full particle in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LWG
- Type
- protein
- Length
- 812 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1; VP3; VP2; VP4
- UniProt
- G0Z733, B3TZF1, B3TZL5
- Pockets
- 9 · best druggability 0.69
Structure
electron microscopy · 4 distinct chains · 8% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 208 | 13% helix, 28% strand | G0Z733 |
| C | VP3 | protein | 300 | 5% helix, 32% strand | G0Z733 |
| B | VP2 | protein | 247 | 7% helix, 26% strand | B3TZF1 |
| D | VP4 | protein | 57 | 7% helix, 2% strand | B3TZL5 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 721 | 0.69 | 0.77 | 73 | empty |
| 2 | 226 | 0.61 | 0.81 | 33 | empty |
| 3 | 230 | 0.50 | 0.75 | 26 | empty |
| 4 | 87 | 0.48 | 0.82 | 16 | empty |
| 5 | 179 | 0.47 | 0.76 | 21 | empty |
Interfaces
5 interfaces between chains.
- A–C · 4747 Ų buried · 60 hydrogen bonds · protein-protein
- C–B · 1609 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 1133 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 949 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 232 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5LWG · Israeli acute paralysis virus heated to 63 degree - full particle · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0Z733
- Every structure of UniProt B3TZF1
- Every structure of UniProt B3TZL5
- Elsewhere: RCSB PDB 5LWG · PDBe 5LWG · UniProt G0Z733 · UniProt B3TZF1 · UniProt B3TZL5
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