Research workbench
Crystal structure of a se-met substituted dictyostelium discoideum ADP-ribose binding macrodomain (residues 342-563) of DDB_G0293866
Analyse Crystal structure of a se-met substituted dictyostelium discoideum ADP-ribose… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LW6
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DDB_G0293866
- UniProt
- Q54B72
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DDB_G0293866 | protein | 221 | 34% helix, 16% strand | Q54B72 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.73 | 0.93 | 32 | empty |
| 2 | 52 | 0.24 | 0.72 | 11 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5LW6 · Crystal structure of a Se-Met substituted Dictyostelium discoideum ADP-ribose binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54B72
- Elsewhere: RCSB PDB 5LW6 · PDBe 5LW6 · UniProt Q54B72
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.