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Structure of human chemokine CCL16

Analyse Structure of human chemokine CCL16 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5LTL
Type: protein
Length: 135 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-C motif chemokine 16
UniProt: O15467
Ligands: NA

Structure

x-ray diffraction · 2 distinct chains · 16% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-C motif chemokine 16	protein	67	16% helix, 31% strand	O15467
B	C-C motif chemokine 16	protein	68	15% helix, 31% strand	O15467

Ligands and binding sites

NA · Sodium ion · metal · chains A
GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 762 Å² buried · 13 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5LTL · Structure of human chemokine CCL16 · the same entry in another collection · chain A against A, TM-score 1.00
O15467 · AlphaFold monomer V2.0 prediction for C-C motif chemokine 16 (O15467) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O15467
Elsewhere: RCSB PDB 5LTL · PDBe 5LTL · UniProt O15467

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