Research workbench
Carboxysome shell protein ccmp from synechococcus elongatus pcc 7942
Analyse Carboxysome shell protein ccmp from synechococcus elongatus pcc 7942 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LT5
- Type
- protein
- Length
- 409 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ccmp
- UniProt
- Q31QW7
- Ligands
- CL
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ccmp | protein | 204 | 39% helix, 30% strand | Q31QW7 |
| B | Ccmp | protein | 205 | 40% helix, 30% strand | Q31QW7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.50 | 0.81 | 19 | empty |
| 2 | 216 | 0.48 | 0.75 | 29 | empty |
| 3 | 89 | 0.46 | 0.80 | 19 | GOL |
Interfaces
1 interface between chains.
- A–B · 1129 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5LT5 · Carboxysome shell protein CcmP from Synechococcus elongatus PCC 7942 · the same entry in another collection · chain A against A, TM-score 1.00
- Q31QW7 · AlphaFold monomer V2.0 prediction for carboxysome shell protein ccmp (Q31QW7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q31QW7
- Elsewhere: RCSB PDB 5LT5 · PDBe 5LT5 · UniProt Q31QW7
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