Research workbench
1.52 a resolution structure of PHND1 from prochlorococcus marinus (mit 9301) in complex with methylphosphonate
Analyse 1.52 a resolution structure of PHND1 from prochlorococcus marinus (mit 9301) in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LQ8
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative phosphonate binding protein for ABC transporter
- UniProt
- A3PC74
- Ligands
- GB
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative phosphonate binding protein for ABC transporter | protein | 272 | 48% helix, 18% strand | A3PC74 |
Ligands and binding sites
- GB · Methylphosphonic acid ester group · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.33 | 0.76 | 15 | empty |
Compared structures
- 5LQ8 · 1.52 A resolution structure of PhnD1 from Prochlorococcus marinus (MIT 9301) in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- A3PC74 · AlphaFold monomer V2.0 prediction for probable ABC transporter phosphite binding protein… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3PC74
- Elsewhere: RCSB PDB 5LQ8 · PDBe 5LQ8 · UniProt A3PC74
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