Research workbench
Glutathione-bound dehydroascorbate reductase 2 of arabidopsis thaliana
Analyse Glutathione-bound dehydroascorbate reductase 2 of arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LOL
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione S-transferase DHAR2
- EC
- 2.5.1.18
- UniProt
- Q9FRL8
- Ligands
- GSH, SO4
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutathione S-transferase DHAR2 (EC 2.5.1.18) | protein | 207 | 55% helix, 11% strand | Q9FRL8 |
Ligands and binding sites
- GSH · Glutathione · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 251 | 0.54 | 0.76 | 43 | GSH |
| 2 | 72 | 0.32 | 0.75 | 20 | empty |
Compared structures
- 5LOL · Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FRL8 · AlphaFold monomer V2.0 prediction for glutathione S-transferase DHAR2 (Q9FRL8) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FRL8
- Elsewhere: RCSB PDB 5LOL · PDBe 5LOL · UniProt Q9FRL8
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