Research workbench
Crystal structure of self-complemented myfa, the major subunit of myf fimbriae from yersinia enterocolitica
Analyse Crystal structure of self-complemented myfa, the major subunit of myf fimbriae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LO7
- Type
- protein
- Length
- 251 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fimbrial protein MYFA,FIMBRIAL protein myfa
- UniProt
- P33406
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fimbrial protein MYFA,FIMBRIAL protein myfa | protein | 125 | 2% helix, 57% strand | P33406 |
| B | Fimbrial protein MYFA,FIMBRIAL protein myfa | protein | 126 | 2% helix, 58% strand | P33406 |
Ligands and binding sites
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.46 | 0.83 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 359 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5LO7 · Crystal structure of self-complemented MyfA, the major subunit of Myf fimbriae from… · the same entry in another collection · chain A against A, TM-score 1.00
- P33406 · AlphaFold monomer V2.0 prediction for fimbrial protein myfa (P33406) · a predicted model of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33406
- Elsewhere: RCSB PDB 5LO7 · PDBe 5LO7 · UniProt P33406
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.