Research workbench
Crystal structure of the endo-1,4-glucanase RBCEL1 E135A with cellotriose
Analyse Crystal structure of the endo-1,4-glucanase RBCEL1 E135A with cellotriose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LJF
- Type
- protein
- Length
- 638 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase
- EC
- 3.2.1.4
- UniProt
- C1JI15
- Ligands
- BGC
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase (EC 3.2.1.4) | protein | 321 | 36% helix, 16% strand | C1JI15 |
| B | Endoglucanase (EC 3.2.1.4) | protein | 317 | 36% helix, 16% strand | C1JI15 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1076 | 0.78 | 0.80 | 85 | BGC |
| 2 | 204 | 0.50 | 0.76 | 35 | BGC |
| 3 | 78 | 0.33 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 555 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5LJF · Crystal structure of the endo-1,4-glucanase RBcel1 E135A with cellotriose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1JI15
- Elsewhere: RCSB PDB 5LJF · PDBe 5LJF · UniProt C1JI15
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