Research workbench
Structure of the E. COLI macb periplasmic domain (P21)
Analyse Structure of the E. COLI macb periplasmic domain (P21) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LJ8
- Type
- protein
- Length
- 402 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrolide export ATP-BINDING/PERMEASE protein macb
- EC
- 3.6.3.-
- UniProt
- P75831
- Pockets
- 4 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrolide export ATP-BINDING/PERMEASE protein macb (EC 3.6.3.-) | protein | 205 | 24% helix, 38% strand | P75831 |
| B | Macrolide export ATP-BINDING/PERMEASE protein macb (EC 3.6.3.-) | protein | 197 | 25% helix, 38% strand | P75831 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 511 | 0.76 | 0.84 | 58 | empty |
| 2 | 387 | 0.76 | 0.86 | 49 | empty |
| 3 | 124 | 0.40 | 0.75 | 24 | empty |
| 4 | 112 | 0.39 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 636 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5LJ8 · Structure of the E. coli MacB periplasmic domain (P21) · the same entry in another collection · chain A against A, TM-score 1.00
- P75831 · AlphaFold monomer V2.0 prediction for macrolide export ATP- BINDING/PERMEASE protein macb… · a predicted model of the same protein · chain B against A, TM-score 0.60
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75831
- Elsewhere: RCSB PDB 5LJ8 · PDBe 5LJ8 · UniProt P75831
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