Research workbench
Crystal structure of allantoin racemase from pseudomonas fluorescens allr
Analyse Crystal structure of allantoin racemase from pseudomonas fluorescens allr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LG5
- Type
- protein
- Length
- 1,415 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Allantoin racemase
- EC
- 5.1.99.3
- UniProt
- E3SAZ9
- Pockets
- 9 · best druggability 0.71
Structure
x-ray diffraction · 3 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Allantoin racemase (EC 5.1.99.3) | protein | 236 | 46% helix, 17% strand | E3SAZ9 |
| B, G | Allantoin racemase (EC 5.1.99.3) | protein | 235 | 46% helix, 17% strand | E3SAZ9 |
| F | Allantoin racemase (EC 5.1.99.3) | protein | 237 | 45% helix, 17% strand | E3SAZ9 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.71 | 0.98 | 25 | empty |
| 2 | 969 | 0.70 | 0.75 | 107 | empty |
| 3 | 509 | 0.61 | 0.75 | 62 | empty |
| 4 | 75 | 0.37 | 0.77 | 17 | empty |
| 5 | 66 | 0.36 | 0.77 | 18 | empty |
Interfaces
12 interfaces between chains.
- D–F · 2099 Ų buried · 50 hydrogen bonds · protein-protein
- A–G · 2020 Ų buried · 51 hydrogen bonds · protein-protein
- B–C · 2003 Ų buried · 47 hydrogen bonds · protein-protein
- C–D · 1989 Ų buried · 26 hydrogen bonds · protein-protein
- A–B · 1963 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 5LG5 · Crystal structure of allantoin racemase from Pseudomonas fluorescens AllR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E3SAZ9
- Elsewhere: RCSB PDB 5LG5 · PDBe 5LG5 · UniProt E3SAZ9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.