Research workbench
Mama rs-1 arstm double mutant
Analyse Mama rs-1 arstm double mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LFL
- Type
- protein
- Length
- 1,058 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnetosome protein mama
- UniProt
- C4XPQ7
- Ligands
- CL
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 4 distinct chains · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | Magnetosome protein mama | protein | 177 | 81% helix, 0% strand | C4XPQ7 |
| B, C | Magnetosome protein mama | protein | 175 | 80% helix, 0% strand | C4XPQ7 |
| D | Magnetosome protein mama | protein | 176 | 80% helix, 0% strand | C4XPQ7 |
| F | Magnetosome protein mama | protein | 178 | 79% helix, 0% strand | C4XPQ7 |
Ligands and binding sites
- CL · Chloride ion · ion · 6 copies · chains A, E, B, F, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 609 | 0.66 | 0.76 | 51 | empty |
| 2 | 69 | 0.30 | 0.74 | 17 | empty |
| 3 | 64 | 0.29 | 0.74 | 16 | CL |
| 4 | 71 | 0.29 | 0.73 | 16 | CL |
Interfaces
7 interfaces between chains.
- A–E · 676 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 675 Ų buried · 4 hydrogen bonds · protein-protein
- C–F · 665 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 660 Ų buried · 5 hydrogen bonds · protein-protein
- D–E · 660 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5LFL · MamA RS-1 ArsTM double mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4XPQ7
- Elsewhere: RCSB PDB 5LFL · PDBe 5LFL · UniProt C4XPQ7
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