Research workbench
Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_06_D12_06_D12
Analyse Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_06_D12_06_D12 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LEB
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DDD_D12_06_D12_06_D12
- Pockets
- 5 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DDD_D12_06_D12_06_D12 | protein | 462 | 55% helix, 0% strand | — |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.42 | 0.78 | 15 | empty |
| 2 | 62 | 0.36 | 0.78 | 13 | empty |
| 3 | 95 | 0.34 | 0.72 | 20 | empty |
| 4 | 86 | 0.31 | 0.73 | 18 | empty |
| 5 | 68 | 0.28 | 0.72 | 14 | empty |
Compared structures
- 5LEB · Crystal structure of DARPin-DARPin rigid fusion, variant DDD_D12_06_D12_06_D12 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LEB · PDBe 5LEB
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