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The solution NMR structure of oxidized rat microsomal cytochrome B5, minimized average structure

Analyse The solution NMR structure of oxidized rat microsomal cytochrome B5, minimized… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1AW3
Type: protein
Length: 94 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome B5
UniProt: P00173
Ligands: HEM
Pockets: 2 · best druggability 0.59

Structure

solution nmr · 1 distinct chain · 35% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome B5	protein	94	35% helix, 16% strand	P00173

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.59	0.85	21	HEM
2	54	0.28	0.74	14	empty

Compared structures

1AW3 · The solution NMR structure of oxidized rat microsomal cytochrome B5, minimized average… · the same entry in another collection · chain A against A, TM-score 1.00
P00173 · AlphaFold monomer V2.0 prediction for cytochrome B5 (P00173) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00173
Elsewhere: RCSB PDB 1AW3 · PDBe 1AW3 · UniProt P00173

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