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Crystal structure of rxlr effector PEXRD54 from phytophthora infestans

Analyse Crystal structure of rxlr effector PEXRD54 from phytophthora infestans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5L7S
Type: protein
Length: 267 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secreted rxlr effector peptide protein
UniProt: D0NBE6
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secreted rxlr effector peptide protein	protein	267	71% helix, 0% strand	D0NBE6

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.32	0.77	13	empty

Compared structures

5L7S · Crystal structure of RXLR effector PexRD54 from Phytophthora infestans · the same entry in another collection · chain A against A, TM-score 1.00
D0NBE6 · AlphaFold monomer V2.0 prediction for rxlr effector protein 54 (D0NBE6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0NBE6
Elsewhere: RCSB PDB 5L7S · PDBe 5L7S · UniProt D0NBE6

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