Research workbench
Structure of deformed wing virus, a honeybee pathogen
Analyse Structure of deformed wing virus, a honeybee pathogen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5L7Q
- Type
- protein
- Length
- 899 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1; VP2; VP3
- UniProt
- L0CTV4, E0YTW0, Q7TG18
- Pockets
- 11 · best druggability 0.64
Structure
electron microscopy · 3 distinct chains · 13% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 252 | 12% helix, 25% strand | L0CTV4 |
| B | VP2 | protein | 250 | 16% helix, 28% strand | E0YTW0 |
| C | VP3 | protein | 397 | 13% helix, 28% strand | Q7TG18 |
Pockets
11 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 384 | 0.64 | 0.78 | 61 | empty |
| 2 | 172 | 0.47 | 0.76 | 27 | empty |
| 3 | 57 | 0.46 | 0.84 | 19 | empty |
| 4 | 133 | 0.46 | 0.77 | 19 | empty |
| 5 | 112 | 0.40 | 0.76 | 21 | empty |
Interfaces
3 interfaces between chains.
- A–C · 4781 Ų buried · 66 hydrogen bonds · protein-protein
- A–B · 1422 Ų buried · 28 hydrogen bonds · protein-protein
- B–C · 1312 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 5L7Q · Structure of deformed wing virus, a honeybee pathogen · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0CTV4
- Every structure of UniProt E0YTW0
- Every structure of UniProt Q7TG18
- Elsewhere: RCSB PDB 5L7Q · PDBe 5L7Q · UniProt L0CTV4 · UniProt E0YTW0 · UniProt Q7TG18
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.