Research workbench
Crystal structure of ELP3 from dehalococcoides mccartyi
Analyse Crystal structure of ELP3 from dehalococcoides mccartyi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5L7J
- Type
- protein
- Length
- 406 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ELP3 family
- UniProt
- M1Q3U6
- Ligands
- FES, ZN
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ELP3 family | protein | 406 | 33% helix, 23% strand | M1Q3U6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 454 | 0.67 | 0.79 | 40 | empty |
| 2 | 239 | 0.53 | 0.76 | 41 | empty |
| 3 | 51 | 0.52 | 0.87 | 14 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 5L7J · Crystal Structure of Elp3 from Dehalococcoides mccartyi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M1Q3U6
- Elsewhere: RCSB PDB 5L7J · PDBe 5L7J · UniProt M1Q3U6
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