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Crystal structure of uncharacterized protein LPG0439

Analyse Crystal structure of uncharacterized protein LPG0439 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5L0L
Type: protein
Length: 430 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q5ZYD3
Ligands: SO4, CL
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	215	26% helix, 25% strand	Q5ZYD3

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A, B
CL · Chloride ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	126	0.78	0.96	23	empty
2	288	0.77	0.89	41	empty
3	104	0.75	0.96	22	empty
4	244	0.67	0.84	32	SO4
5	244	0.66	0.83	32	SO4

Interfaces

1 interface between chains.

A–B · 2652 Å² buried · 30 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

5L0L · Crystal structure of Uncharacterized protein LPG0439 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZYD3
Elsewhere: RCSB PDB 5L0L · PDBe 5L0L · UniProt Q5ZYD3

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