Research workbench
Structure of IHO670 flagellar-like filament
Analyse Structure of IHO670 flagellar-like filament in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KYH
- Type
- protein
- Length
- 5,082 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IHO670
- UniProt
- A8AAA0
- Pockets
- 20 · best druggability 0.87
Structure
electron microscopy · 1 distinct chain · 14% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U | IHO670 | protein | 242 | 14% helix, 39% strand | A8AAA0 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.87 | 0.88 | 129 | empty |
| 2 | 1048 | 0.87 | 0.87 | 159 | empty |
| 3 | 1176 | 0.83 | 0.84 | 143 | empty |
| 4 | 916 | 0.82 | 0.84 | 115 | empty |
| 5 | 531 | 0.82 | 0.88 | 70 | empty |
Interfaces
99 interfaces between chains.
- R–U · 1381 Ų buried · 10 hydrogen bonds · protein-protein
- E–H · 1381 Ų buried · 10 hydrogen bonds · protein-protein
- C–F · 1379 Ų buried · 10 hydrogen bonds · protein-protein
- G–J · 1379 Ų buried · 10 hydrogen bonds · protein-protein
- P–S · 1378 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 21 disulfide (disulfide).
Compared structures
- 5KYH · Structure of Iho670 Flagellar-like Filament · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8AAA0
- Elsewhere: RCSB PDB 5KYH · PDBe 5KYH · UniProt A8AAA0
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