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Solution structure of the catalytic domain of zoocin a

Analyse Solution structure of the catalytic domain of zoocin a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5KVP
Type: protein
Length: 159 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zoocin a endopeptidase
UniProt: O54308
Ligands: ZN, UNL
Pockets: 1 · best druggability 0.72

Structure

solution nmr · 1 distinct chain · 3% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zoocin a endopeptidase	protein	159	3% helix, 28% strand	O54308

Ligands and binding sites

ZN · Zinc ion · metal · chains A
UNL · Unknown ligand · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	415	0.72	0.82	27	empty

Compared structures

5KVP · Solution structure of the catalytic domain of zoocin A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O54308
Elsewhere: RCSB PDB 5KVP · PDBe 5KVP · UniProt O54308

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