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Crystal structure of human beta-defensin 4 (HBD4)

Analyse Crystal structure of human beta-defensin 4 (HBD4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5KI9
Type: protein
Length: 43 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-defensin 104
UniProt: Q8WTQ1
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-defensin 104	protein	43	7% helix, 40% strand	Q8WTQ1

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A
TFA · trifluoroacetic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide, 3 modified (disulfide, methylation).

Compared structures

5KI9 · Crystal structure of human beta-defensin 4 (HBD4) · the same entry in another collection · chain A against A, TM-score 1.00
Q8WTQ1 · AlphaFold monomer V2.0 prediction for beta-defensin 104 (Q8WTQ1) · a predicted model of the same protein · chain A against A, TM-score 0.74

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8WTQ1
Elsewhere: RCSB PDB 5KI9 · PDBe 5KI9 · UniProt Q8WTQ1

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