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Crystal structures of the burkholderia multivorans hopanoid transporter hpnn

Analyse Crystal structures of the burkholderia multivorans hopanoid transporter hpnn in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5KHN
Type: protein
Length: 1,696 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rnd transporter
UniProt: A0A1B4TSD3
Pockets: 20 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 69% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Rnd transporter	protein	848	68% helix, 5% strand	A0A1B4TSD3
A	Rnd transporter	protein	848	69% helix, 5% strand	A0A1B4TSD3

Pockets

20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1068	0.85	0.86	90	empty
2	1166	0.85	0.86	104	empty
3	1117	0.80	0.81	85	empty
4	490	0.79	0.86	49	empty
5	58	0.73	0.99	20	empty

Interfaces

1 interface between chains.

B–A · 2663 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5KHN · Crystal structures of the Burkholderia multivorans hopanoid transporter HpnN · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1B4TSD3
Elsewhere: RCSB PDB 5KHN · PDBe 5KHN · UniProt A0A1B4TSD3

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