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Crystal structure of periplasmic heme binding protein hutb of vibrio cholerae

Analyse Crystal structure of periplasmic heme binding protein hutb of vibrio cholerae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5KHL
Type: protein
Length: 257 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hemin ABC transporter, periplasmic hemin-binding protein hutb
UniProt: A0A0H3AE70
Ligands: SO4
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Hemin ABC transporter, periplasmic hemin-binding protein hutb	protein	257	44% helix, 15% strand	A0A0H3AE70

Ligands and binding sites

SO4 · Sulfate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	216	0.49	0.75	41	empty

Compared structures

5KHL · Crystal Structure of periplasmic Heme binding protein HutB of Vibrio cholerae · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3AE70
Elsewhere: RCSB PDB 5KHL · PDBe 5KHL · UniProt A0A0H3AE70

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