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Structure of rubella virus E1 glycoprotein ectodomain fitted into sub- tomogram averaged surface spike density of rubella virus
Analyse Structure of rubella virus E1 glycoprotein ectodomain fitted into sub- tomogram… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KHC
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E1 glycoprotein
- UniProt
- P08563
- Pockets
- 1 · best druggability 0.28
Structure
electron microscopy · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E1 glycoprotein | protein | 417 | 10% helix, 43% strand | P08563 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.28 | 0.73 | 11 | empty |
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 5KHC · Structure of rubella virus E1 glycoprotein ectodomain fitted into sub-tomogram averaged… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08563
- Elsewhere: RCSB PDB 5KHC · PDBe 5KHC · UniProt P08563
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