Research workbench
Crystal structure of an RNA tertiary domain essential to HCV ires- mediated translation initiation.
Analyse Crystal structure of an RNA tertiary domain essential to HCV ires- mediated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KH6
- Type
- RNA
- Length
- 48 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Jiiiabc
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Jiiiabc | rna | 48 | — | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.49 | 0.74 | 15 | empty |
| 2 | 197 | 0.45 | 0.75 | 15 | empty |
| 3 | 67 | 0.25 | 0.72 | 12 | empty |
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 1KH6 · Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KH6 · PDBe 1KH6
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