Research workbench
Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate synthase (upps) in complex with ~{N}-(3-azanyl-3- oxidanylidene-propyl)-5-(1-benzothiophen-5-yl)-1-(phenylmethyl)-~{N}- [(4-propan-2-YLOXYPHENYL)METHYL]PYRAZOLE-4-carboxamide
Analyse Crystal structure of steptococcus pneumoniae undecaprenyl pyrophosphate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KH5
- Type
- protein
- Length
- 455 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q97SR4
- Ligands
- 6TC
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 230 | — | Q97SR4 |
| B | — | protein | 225 | — | Q97SR4 |
Ligands and binding sites
- 6TC · ~{N}-(3-azanyl-3-oxidanylidene-propyl)-5-(1-benzothiophen-5-yl)-1-(phenylmethyl)-~{N}-[(4-propan-2-yloxyphenyl)methyl]pyrazole-4-carboxamide · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KH5 · Crystal Structure of Steptococcus pneumoniae Undecaprenyl pyrophosphate Synthase (UPPS)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q97SR4 · AlphaFold monomer V2.0 prediction for isoprenyl transferase (Q97SR4) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97SR4
- Elsewhere: RCSB PDB 5KH5 · PDBe 5KH5 · UniProt Q97SR4
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