Research workbench
Structure of K. pneumonia mrkh in its apo state.
Analyse Structure of K. pneumonia mrkh in its apo state. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KEC
- Type
- protein
- Length
- 454 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar brake protein ycgr
- UniProt
- G3FT00
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Flagellar brake protein ycgr | protein | 222 | 17% helix, 49% strand | G3FT00 |
| A | Flagellar brake protein ycgr | protein | 232 | 17% helix, 49% strand | G3FT00 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 844 | 0.75 | 0.79 | 63 | empty |
| 2 | 585 | 0.70 | 0.79 | 69 | empty |
| 3 | 115 | 0.47 | 0.79 | 19 | empty |
| 4 | 118 | 0.38 | 0.75 | 19 | empty |
| 5 | 54 | 0.28 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- D–A · 2208 Ų buried · 52 hydrogen bonds · protein-protein
Compared structures
- 5KEC · Structure of K. pneumonia MrkH in its apo state. · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3FT00
- Elsewhere: RCSB PDB 5KEC · PDBe 5KEC · UniProt G3FT00
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