Research workbench
BT_4244 metallopeptidase from bacteroides thetaiotaomicron
Analyse BT_4244 metallopeptidase from bacteroides thetaiotaomicron in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KD2
- Type
- protein
- Length
- 591 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallopeptidase
- UniProt
- Q89ZX7
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallopeptidase | protein | 591 | 35% helix, 20% strand | Q89ZX7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.41 | 0.75 | 21 | empty |
| 2 | 68 | 0.33 | 0.76 | 19 | empty |
Compared structures
- 5KD2 · BT_4244 metallopeptidase from Bacteroides thetaiotaomicron · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89ZX7
- Elsewhere: RCSB PDB 5KD2 · PDBe 5KD2 · UniProt Q89ZX7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.