Research workbench
Crystal structure of the aromatic prenyltransferase atapt (apo state) from aspergillus terreus A8-4
Analyse Crystal structure of the aromatic prenyltransferase atapt (apo state) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KCG
- Type
- protein
- Length
- 795 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aromatic prenyltransferase
- Pockets
- 9 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aromatic prenyltransferase | protein | 398 | 43% helix, 20% strand | — |
| B | Aromatic prenyltransferase | protein | 397 | 44% helix, 20% strand | — |
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 952 | 0.81 | 0.83 | 80 | empty |
| 2 | 905 | 0.81 | 0.83 | 81 | empty |
| 3 | 78 | 0.74 | 0.98 | 20 | empty |
| 4 | 85 | 0.74 | 0.97 | 22 | empty |
| 5 | 105 | 0.55 | 0.84 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1376 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 5KCG · Crystal structure of the aromatic prenyltransferase AtaPT (apo state) from Aspergillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5KCG · PDBe 5KCG
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