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Crystal structure of chlamydia trachomatis dsba
Analyse Crystal structure of chlamydia trachomatis dsba in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5KBC
- Type
- protein
- Length
- 390 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dsba
- UniProt
- G4NNC6
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dsba | protein | 195 | 46% helix, 14% strand | G4NNC6 |
| B | Dsba | protein | 195 | 46% helix, 13% strand | G4NNC6 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 656 | 0.71 | 0.78 | 51 | empty |
| 2 | 418 | 0.64 | 0.77 | 45 | empty |
| 3 | 70 | 0.39 | 0.79 | 14 | empty |
| 4 | 51 | 0.39 | 0.81 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1663 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5KBC · Crystal structure of Chlamydia trachomatis DsbA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4NNC6
- Elsewhere: RCSB PDB 5KBC · PDBe 5KBC · UniProt G4NNC6
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