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Crystal structure of the K142A mutant of E. COLI muty (core fragment)

Analyse Crystal structure of the K142A mutant of E. COLI muty (core fragment) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1KG4
Type: protein
Length: 224 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: A/G-specific adenine glycosylase
EC: 3.2.2.-
UniProt: P17802
Ligands: SF4, SO4
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	A/G-specific adenine glycosylase (EC 3.2.2.-)	protein	224	62% helix, 0% strand	P17802

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · chains A
SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.56	0.80	33	empty

Compared structures

1KG4 · Crystal structure of the K142A mutant of E. coli MutY (core fragment) · the same entry in another collection · chain A against A, TM-score 1.00
P17802 · AlphaFold monomer V2.0 prediction for adenine DNA glycosylase (P17802) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17802
Elsewhere: RCSB PDB 1KG4 · PDBe 1KG4 · UniProt P17802

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