Research workbench
Crystal structure of the core fragment of muty from E.COLI at 1.55A resolution
Analyse Crystal structure of the core fragment of muty from E.COLI at 1.55A resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KG3
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A/G-specific adenine glycosylase
- EC
- 3.2.2.-
- UniProt
- P17802
- Ligands
- SF4, SO4
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | A/G-specific adenine glycosylase (EC 3.2.2.-) | protein | 224 | 61% helix, 0% strand | P17802 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.65 | 0.95 | 19 | SF4 |
| 2 | 216 | 0.57 | 0.79 | 34 | empty |
Compared structures
- 1KG3 · Crystal structure of the core fragment of MutY from E.coli at 1.55A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P17802 · AlphaFold monomer V2.0 prediction for adenine DNA glycosylase (P17802) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17802
- Elsewhere: RCSB PDB 1KG3 · PDBe 1KG3 · UniProt P17802
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