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Structure of nnqqny from yeast prion SUP35 with cadmium acetate determined by microed

Analyse Structure of nnqqny from yeast prion SUP35 with cadmium acetate determined by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5K2F
Type
protein
Length
6 residues
Chains
1
Method
electron crystallography
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P05453
Ligands
CD

Structure

electron crystallography · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein6—P05453

Ligands and binding sites

  • CD · Cadmium ion · metal · chains A
  • ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5K2F · Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED · the same entry in another collection · chain A against A, TM-score 1.00
  • P05453 · AlphaFold monomer V2.0 prediction for eukaryotic peptide chain release factor GTP-binding… · a predicted model of the same protein · chain A against A, TM-score 0.66

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