Research workbench
Crystal structure of oxidized shewanella yellow enzyme 4 (SYE4) in complex with P-methylphenol
Analyse Crystal structure of oxidized shewanella yellow enzyme 4 (SYE4) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5K1Q
- Type
- protein
- Length
- 347 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD(P)H:FLAVIN oxidoreductase SYE4
- EC
- 1.5.1.30
- UniProt
- Q8EBV3
- Ligands
- PCR, FMN
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD(P)H:FLAVIN oxidoreductase SYE4 (EC 1.5.1.30) | protein | 347 | 39% helix, 16% strand | Q8EBV3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 406 | 0.69 | 0.81 | 39 | FMN, PCR |
| 2 | 57 | 0.37 | 0.79 | 15 | empty |
Compared structures
- 5K1Q · Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EBV3
- Elsewhere: RCSB PDB 5K1Q · PDBe 5K1Q · UniProt Q8EBV3
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