Research workbench
Crystal structure of the lasso peptide sphingopyxin I (spi)
Analyse Crystal structure of the lasso peptide sphingopyxin I (spi) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JQF
- Type
- protein
- Length
- 42 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sphingopyxin I
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sphingopyxin I | protein | 21 | 0% helix, 48% strand | — |
Interfaces
1 interface between chains.
- A–B · 522 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5JQF · Crystal structure of the lasso peptide Sphingopyxin I (SpI) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5JQF · PDBe 5JQF
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