Research workbench
Crystal structure of a rice (oryza sativa) cellulose synthase plant conserved region (P-cr)
Analyse Crystal structure of a rice (oryza sativa) cellulose synthase plant conserved… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JNP
- Type
- protein
- Length
- 154 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable cellulose synthase a catalytic subunit 8 [udp- forming]
- EC
- 2.4.1.12
- UniProt
- Q84ZN6
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 65% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable cellulose synthase a catalytic subunit 8 [udp- forming] (EC 2.4.1.12) | protein | 77 | 65% helix, 0% strand | Q84ZN6 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
- FLC · Citrate anion · additive · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.60 | 0.85 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 959 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 5JNP · Crystal structure of a rice (Oryza Sativa) cellulose synthase plant conserved region… · the same entry in another collection · chain A against A, TM-score 1.00
- Q84ZN6 · AlphaFold monomer V2.0 prediction for probable cellulose synthase a catalytic subunit 8… · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84ZN6
- Elsewhere: RCSB PDB 5JNP · PDBe 5JNP · UniProt Q84ZN6
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