Research workbench
Crystal structure of arginyl-tRNA synthetase from plasmodium falciparum (pfrrs)
Analyse Crystal structure of arginyl-tRNA synthetase from plasmodium falciparum (pfrrs) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JLD
- Type
- protein
- Length
- 559 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginyl-tRNA synthetase, putative
- EC
- 6.1.1.19
- UniProt
- Q8I5M2
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginyl-tRNA synthetase, putative (EC 6.1.1.19) | protein | 559 | 54% helix, 11% strand | Q8I5M2 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 303 | 0.58 | 0.77 | 41 | empty |
| 2 | 86 | 0.51 | 0.83 | 22 | empty |
| 3 | 123 | 0.45 | 0.78 | 18 | empty |
| 4 | 117 | 0.44 | 0.77 | 24 | empty |
| 5 | 80 | 0.42 | 0.78 | 17 | empty |
Compared structures
- 5JLD · Crystal Structure of Arginyl-tRNA Synthetase from Plasmodium falciparum (PfRRS) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8I5M2
- Elsewhere: RCSB PDB 5JLD · PDBe 5JLD · UniProt Q8I5M2
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