Research workbench
Geranylgeranyl pyrophosphate synthetase from archaeon geoglobus acetivorans
Analyse Geranylgeranyl pyrophosphate synthetase from archaeon geoglobus acetivorans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JFQ
- Type
- protein
- Length
- 610 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geranylgeranyl pyrophosphate synthetase
- UniProt
- A0A0A7GEY4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geranylgeranyl pyrophosphate synthetase | protein | 304 | 76% helix, 0% strand | A0A0A7GEY4 |
| B | Geranylgeranyl pyrophosphate synthetase | protein | 306 | 75% helix, 1% strand | A0A0A7GEY4 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 696 | 0.70 | 0.77 | 56 | empty |
| 2 | 607 | 0.65 | 0.75 | 55 | empty |
Interfaces
1 interface between chains.
- A–B · 1677 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5JFQ · Geranylgeranyl Pyrophosphate Synthetase from archaeon Geoglobus acetivorans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A7GEY4
- Elsewhere: RCSB PDB 5JFQ · PDBe 5JFQ · UniProt A0A0A7GEY4
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