Research workbench
Crystal structure of uncharacterized protein BCAV_2135 from beutenbergia cavernae
Analyse Crystal structure of uncharacterized protein BCAV_2135 from beutenbergia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5JBR
- Type
- protein
- Length
- 291 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein BCAV_2135
- UniProt
- C5C6I1
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein BCAV_2135 | protein | 149 | 71% helix, 11% strand | C5C6I1 |
| B | Uncharacterized protein BCAV_2135 | protein | 142 | 70% helix, 11% strand | C5C6I1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 257 | 0.77 | 0.90 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 2114 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 5JBR · Crystal structure of uncharacterized protein Bcav_2135 from Beutenbergia cavernae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5C6I1
- Elsewhere: RCSB PDB 5JBR · PDBe 5JBR · UniProt C5C6I1
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