Research workbench
Solution structure of the eukaryotic pore-forming cytolysin equinatoxin II
Analyse Solution structure of the eukaryotic pore-forming cytolysin equinatoxin II in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1KD6
- Type
- protein
- Length
- 179 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Equinatoxin II
- UniProt
- P61914
- Pockets
- 3 · best druggability 0.71
Structure
solution nmr · 1 distinct chain · 7% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Equinatoxin II | protein | 179 | 7% helix, 36% strand | P61914 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.71 | 0.97 | 20 | empty |
| 2 | 192 | 0.61 | 0.82 | 37 | empty |
| 3 | 189 | 0.47 | 0.75 | 29 | empty |
Compared structures
- 1KD6 · Solution structure of the eukaryotic pore-forming cytolysin equinatoxin II · the same entry in another collection · chain A against A, TM-score 1.00
- P61914 · AlphaFold monomer V2.0 prediction for delta-actitoxin-AEQ1A (P61914) · a predicted model of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61914
- Elsewhere: RCSB PDB 1KD6 · PDBe 1KD6 · UniProt P61914
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