Research workbench
Structure of lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21 ångström resolution
Analyse Structure of lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5J9G
- Type
- protein
- Length
- 676 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyceraldehyde-3-P dehydrogenase
- EC
- 1.2.1.12
- UniProt
- Q5FL51
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glyceraldehyde-3-P dehydrogenase (EC 1.2.1.12) | protein | 338 | 30% helix, 27% strand | Q5FL51 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 413 | 0.60 | 0.76 | 55 | empty |
| 2 | 397 | 0.59 | 0.76 | 41 | empty |
| 3 | 508 | 0.59 | 0.74 | 46 | empty |
| 4 | 51 | 0.30 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 427 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5J9G · Structure of Lactobacillus acidophilus glyceraldehyde-3-phosphate dehydrogenase at 2.21… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5FL51
- Elsewhere: RCSB PDB 5J9G · PDBe 5J9G · UniProt Q5FL51
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