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Structure of FJOH_4558, a chitin-binding susd homolog from flavobacterium johnsoniae

Analyse Structure of FJOH_4558, a chitin-binding susd homolog from flavobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5J90
Type: protein
Length: 964 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RAGB/SUSD domain protein
UniProt: A5FB66
Pockets: 14 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RAGB/SUSD domain protein	protein	482	50% helix, 5% strand	A5FB66

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 11 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	127	0.73	0.93	31	empty
2	55	0.70	0.98	20	empty
3	103	0.63	0.88	32	empty
4	63	0.61	0.91	21	empty
5	59	0.61	0.92	22	empty

Interfaces

1 interface between chains.

A–B · 834 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

5J90 · Structure of Fjoh_4558, a chitin-binding SusD homolog from Flavobacterium johnsoniae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5FB66
Elsewhere: RCSB PDB 5J90 · PDBe 5J90 · UniProt A5FB66

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