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Structure of lectin from colocasia ESCULENTA(L.) schott

Analyse Structure of lectin from colocasia ESCULENTA(L.) schott in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5J76
Type: protein
Length: 220 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 12KD storage protein
UniProt: Q39487

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	12KD storage protein	protein	109	0% helix, 43% strand	Q39487
B	12KD storage protein	protein	111	0% helix, 42% strand	Q39487

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1881 Å² buried · 29 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5J76 · Structure of Lectin from Colocasia esculenta(L.) Schott · the same entry in another collection · chain A against A, TM-score 1.00
Q39487 · AlphaFold monomer V2.0 prediction for mannose-specific lectin 1 (Q39487) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q39487
Elsewhere: RCSB PDB 5J76 · PDBe 5J76 · UniProt Q39487

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