Research workbench
Structure of bacillus nanornase a (wt)
Analyse Structure of bacillus nanornase a (wt) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5J21
- Type
- protein
- Length
- 1,256 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bifunctional oligoribonuclease and pap phosphatase nrna
- EC
- 3.1.3.7
- UniProt
- O34600
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 3 distinct chains · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bifunctional oligoribonuclease and pap phosphatase nrna (EC 3.1.3.7) | protein | 312 | 44% helix, 17% strand | O34600 |
| B | Bifunctional oligoribonuclease and pap phosphatase nrna (EC 3.1.3.7) | protein | 314 | 45% helix, 19% strand | O34600 |
| C, D | Bifunctional oligoribonuclease and pap phosphatase nrna (EC 3.1.3.7) | protein | 315 | 44% helix, 19% strand | O34600 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 441 | 0.71 | 0.82 | 46 | empty |
| 2 | 866 | 0.67 | 0.73 | 72 | empty |
| 3 | 708 | 0.62 | 0.73 | 59 | empty |
| 4 | 252 | 0.51 | 0.75 | 39 | empty |
| 5 | 210 | 0.46 | 0.74 | 30 | empty |
Interfaces
4 interfaces between chains.
- B–C · 1631 Ų buried · 17 hydrogen bonds · protein-protein
- A–D · 800 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 321 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 294 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34600
- Elsewhere: RCSB PDB 5J21 · PDBe 5J21 · UniProt O34600
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